Github nfcore mag
Webnf-core/mag: Output Introduction This document describes the output produced by the pipeline. Most of the plots are taken from the MultiQC report, which summarises results at the end of the pipeline. The directories listed below will be created in the results directory after the pipeline has finished. WebMay 4, 2024 · In the next mag release there will be an option to run BUSCO in offline mode, but so far it needs network to download the file_versions.tsv file (not big) to check and report if there are newer versions of the lineage datasets available.
Github nfcore mag
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WebNov 16, 2024 · Currently, nf-core/mag is using almost exclusively local modules because we did DSL2 conversion before modules were set up in a stable way. Also, please try to realize also for Maxbin2 the function of --binning_map_mode Member Author jfy133 commented on Nov 17, 2024 Thanks for the feedback @d4straub , I take everything into … Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. The pipeline is built using Nextflow, a workflow tool to run …
Webnf-core/mag Assembly and binning of metagenomes Nextflow Groovy Python HTML workflow bioinformatics nanopore pipeline annotation nextflow assembly metagenomics binning metagenomes nanopore-sequencing nf-core long-read-sequencing WebNov 15, 2024 · nf-core / mag Public Notifications Fork 69 Star 125 Code Issues 38 Pull requests 3 Actions Security Insights New issue Bump up BUSCO version to 5.4.3 and escape lack of marker genes #352 Merged alexhbnr merged 3 commits into nf-core: dev from alexhbnr: busco_nomarkers on Nov 15, 2024 +12 −3 Conversation 4 Commits 3 …
WebFeb 2, 2024 · The nf-core/mag pipeline comes with a small test dataset that is used for continuous integration (CI) testing with GitHub Actions. In addition, ‘full-size’ pipeline tests are run on AWS for each pipeline release to ensure cloud compatibility and an error-free performance on real-world datasets. WebAug 14, 2024 · nf-core / mag Public Notifications Fork 58 Star 100 Code Issues 23 Pull requests 2 Actions Security Insights New issue CAT: Database was built with a different version of Diamond and is incompatible. #90 Closed ropolomx opened this issue on Aug 14, 2024 · 9 comments ropolomx commented on Aug 14, 2024 • edited Author
WebKey Points. nf-core is a community-led project to develop a set of best-practice pipelines built using the Nextflow workflow management system. The nf-core tool (nf-core) is a suite of helper tools that aims to help people run and develop nf-core pipelines.
Webmag/mag.nf at master · nf-core/mag · GitHub nf-core / mag Public Notifications Star Code master mag/workflows/mag.nf Go to file Cannot retrieve contributors at this time 822 … teaching to the top bookWebnf-core · GitHub nf-core A community effort to collect a curated set of analysis pipelines built using Nextflow. 553 followers http://nf-co.re @nf_core @[email protected] [email protected] Verified Overview … teaching to the test英语作文WebMar 7, 2024 · Deactivate CONCOCT binning from full tests · Issue #403 · nf-core/mag · GitHub Deactivate CONCOCT binning from full tests #403 Open jfy133 opened this issue on Mar 7 · 2 comments Member jfy133 commented on Mar 7 Description of the bug Command used and terminal output Relevant files System information No response … south of the border音乐Webnf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. The pipeline is built using Nextflow, a workflow tool to run … Assembly and binning of metagenomes. Contribute to nf-core/mag development … Assembly and binning of metagenomes. Contribute to nf-core/mag development … GitHub is where people build software. More than 65 million people use GitHub … 21 Branches - GitHub - nf-core/mag: Assembly and binning of metagenomes Initial release of nf-core/mag, created with the nf-core template. Added. short and … Modules - GitHub - nf-core/mag: Assembly and binning of metagenomes 58 Forks - GitHub - nf-core/mag: Assembly and binning of metagenomes Python 10.3 - GitHub - nf-core/mag: Assembly and binning of metagenomes teaching to the top podcastWebnf-core is a community-led project to develop a set of best-practice pipelines built using Nextflow. Pipelines are governed by a set of guidelines, enforced by community code reviews and automatic code testing. What is nf-core tools? nf-core provides a suite of helper tools aim to help users run and develop pipelines. south of the border 下载south of the boroughWebunable to execute the process NFCORE_MAG:MAG:KRONA_DB #369 opened 2 weeks ago by mathavanpu Enable more options to vary the BowTie2 alignment parameters … teaching to the test翻译